Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
THCA rs62458685 chr7:43962441 A/T 1.66E-9 501 31.03 33.5 31.03 KM Plot
THCA rs62458689 chr7:43976033 C/A 2.61E-8 499 31.03 33.52 32.37 KM Plot
THCA rs62458690 chr7:43988188 C/T 2.23E-8 503 31.15 33.5 32.37 KM Plot
THCA rs62458698 chr7:44008051 C/T 2.65E-10 492 31.15 33.08 32.17 KM Plot
THCA rs62724260 chr12:123772793 CAA/C 0.000109 489 31.68 31.77 12.53 KM Plot
THCA rs6420300 chr13:50125935 A/C 1.75E-5 501 34.52 30.37 31.75 KM Plot
THCA rs643317 chr11:67350457 T/C 4.56E-6 499 31.3 27.27 31.87 KM Plot
THCA rs643318 chr11:67350456 C/G 4.56E-6 499 31.3 27.27 31.87 KM Plot
THCA rs6437026 chr2:232473452 A/G 3.26E-6 491 22.75 29.73 31.8 KM Plot
THCA rs6438759 chr3:122440066 A/G 6.66E-6 497 20.87 26.65 31.98 KM Plot
THCA rs6438762 chr3:122462306 A/G 6.03E-6 502 20.87 25.87 31.93 KM Plot
THCA rs6438763 chr3:122463126 A/G 0.00014 503 32.03 26.57 16.37 KM Plot
THCA rs6438765 chr3:122506727 A/G 6.11E-6 501 20.87 26.65 31.98 KM Plot
THCA rs6463210 chr7:43972296 G/A 2.61E-8 499 31.03 33.52 32.37 KM Plot
THCA rs6478493 chr9:123775513 G/A 2.77E-5 502 31.7 31.42 21.97 KM Plot